I am pretty sure my code is sound and I am seeing some unpredictable behavior with the AVR so I am suspecting that perhaps the voltage from the disk drive is unstable. When I was getting readable intervals, I was getting all of them 200-400 cycles apart and some of those intervals should be 60 cycles (4 microseconds at 14.7 MHz) I won't be able to address this issue until some hardware that I've ordered in the mail arrives so for now the disk drive project is officially shelved.
Once the parts arrive, I'll probably start working on the VLDP project instead because that has much more potential for awesomeness. :)
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